FAIF - Fast Artificial Intelligence Framework

The C++ library for bioinformatics and artificial intelligence. Basic abstractions (like attribute, domain, state, etc.), DNA primitives (Nucleotide, Chain, EnergyNucleo, SecStruct, FoldedChain, FoldedPair, Codon, CodonAminoTable, Nussinov algorithm), population genetics primitives (Allele, Locus, Loci), Timeseries primitives (TimeSeriesDigit, TimeSeriesReal, linear resampling, autoregressive predictor), search in tree like structures (depth-first, breadth-first, unified cost, A*), Evolutionary Algorithm, EM (Expectaiton-Maximization) algorithm, Hill Climbing algorithm, Naive Bayesian Classifier, cross - validator, Active Object based on boost::thread, Random generators, Gaussian eliminator.

• attribute, domain
• DNA: (quick start, algorithms description)
• hapl: population genetics (Allele, Locus, Loci)
• Timeseries: (algorithms description)
• learning naive Bayesian classifier (quick start )
• search
  • uninformed search in tree like structures: searchBreadthFirst, searchDepthFirst (quick start)
  • informed search: searchUnifiedCost (quick start)
  • heuristic search: searchAStar (quick start)
  • Evolutionary Algorithm (quick start)
  • Hill Climbing Algirhthm (quick start)
  • EM (Expectation-Maximization) Algorithm
• utils
  • Random - wrapper on boost::random (quick start)
  • actobj: active object (quick start)