faif::dna::Chain Class Reference

The DNA strand (single). More...

#include <Chain.h>

Collaboration diagram for faif::dna::Chain:

Classes
class	const_iterator
class	iterator

Public Member Functions
	Chain (const Chain &ch)
	Chain (const std::string &seq)
	Chain (const const_iterator &begin, const const_iterator &end)
Chain &	operator= (const Chain &ch)
Chain &	operator+= (const Nucleotide &val)
Chain &	operator+= (const Chain &ch)
bool	operator== (const Chain &ch) const
bool	operator!= (const Chain &ch) const
const Nucleotide &	operator[] (int index) const
Nucleotide &	operator[] (int index)
int	getLength () const
iterator	begin ()
const_iterator	begin () const
iterator	end ()
const_iterator	end () const
std::string	getString () const
Chain	complementary () const

Detailed Description

The DNA strand (single).

Sequence of nucleotides, the begin of sequence = 5' end of molecule, the end of sequence = 3' end of molecule

Constructor & Destructor Documentation

faif::dna::Chain::Chain ( const const_iterator &  begin, const const_iterator &  end  )

inline

copy constructor from range

Member Function Documentation

Chain& faif::dna::Chain::operator+= ( const Nucleotide &  val )

inline

insert a new nucleotide at the and

bool faif::dna::Chain::operator== ( const Chain &  ch ) const

inline

comparison of chains

bool faif::dna::Chain::operator!= ( const Chain &  ch ) const

inline

comparison of chains

const Nucleotide& faif::dna::Chain::operator[] ( int  index ) const

inline

accessor for index, throws out_of_range

Nucleotide& faif::dna::Chain::operator[] ( int  index )

inline

accessor for index, throws out_of_range

int faif::dna::Chain::getLength ( ) const

inline

accessor - length

Referenced by faif::dna::createSubChain().

iterator faif::dna::Chain::begin ( )

inline

mutator - iterator

Referenced by faif::dna::createSubChain().

const_iterator faif::dna::Chain::begin ( ) const

inline

mutator - const iterator

iterator faif::dna::Chain::end ( )

inline

mutator - iterator

Referenced by faif::dna::createSubChain().

const_iterator faif::dna::Chain::end ( ) const

inline

mutator - const iterator

std::string faif::dna::Chain::getString ( ) const

inline

the string for chain

Referenced by faif::dna::operator<<().

Chain faif::dna::Chain::complementary ( ) const

inline

creates new complementary chain (always the 5' end on index 0)

References complementary().

Referenced by complementary().

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The documentation for this class was generated from the following file:

• faif/dna/Chain.h