faif::dna::EnergyNucleo Class Reference

the maps between pair of nucleotides and its energy More...

#include <EnergyNucleo.h>

Collaboration diagram for faif::dna::EnergyNucleo:

Public Member Functions
	EnergyNucleo (EnergyValue defaultEnergy)
	EnergyNucleo (const EnergyNucleo &energy)
EnergyValue	getEnergy (const faif::dna::Nucleotide &a, const faif::dna::Nucleotide &b) const
	return the energy of given pair More...
void	addPair (const faif::dna::Nucleotide &a, const faif::dna::Nucleotide &b, const EnergyValue &val)
	stores the pair and its energy More...

Detailed Description

the maps between pair of nucleotides and its energy

Gives energy for two nucleotides, used f.e. in secondary structure calculation

Constructor & Destructor Documentation

faif::dna::EnergyNucleo::EnergyNucleo ( EnergyValue  defaultEnergy )

inlineexplicit

c-tor

faif::dna::EnergyNucleo::EnergyNucleo ( const EnergyNucleo &  energy )

inline

copy c-tor

Member Function Documentation

EnergyValue faif::dna::EnergyNucleo::getEnergy ( const faif::dna::Nucleotide &  a, const faif::dna::Nucleotide &  b  ) const

inline

return the energy of given pair

void faif::dna::EnergyNucleo::addPair ( const faif::dna::Nucleotide &  a, const faif::dna::Nucleotide &  b, const EnergyValue &  val  )

inline

stores the pair and its energy

Referenced by faif::dna::createDefaultEnergy().

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The documentation for this class was generated from the following file:

• faif/dna/EnergyNucleo.h