faif::dna::FoldedMatrix Class Reference

#include <FoldedMatrix.h>

Inheritance diagram for faif::dna::FoldedMatrix:

Collaboration diagram for faif::dna::FoldedMatrix:

Public Member Functions
	FoldedMatrix (const FoldedMatrixStrategy &strategy, unsigned int max_foldings)
const SecStructures &	getStructures ()
EnergyValue	getSecStructEnergy ()
SecStruct	findInDepth () const
std::ostream &	printMatrix (std::ostream &os, int print_width) const
std::ostream &	printStructures (std::ostream &os, int print_width) const

Detailed Description

dna chain or two dna chains with energy matrix

Member Function Documentation

const SecStructures & faif::dna::FoldedMatrix::getStructures ( )

inline

calculates secondary structures (backtracking in energy matrix)

References faif::dna::SecStruct::addPair(), faif::dna::SecStruct::append(), and faif::dna::FoldedMatrixStrategy::getEnergy().

SecStruct faif::dna::FoldedMatrix::findInDepth ( ) const

inline

calculates one secondary structure (energy matrix view in depth)

References faif::dna::operator<<().

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The documentation for this class was generated from the following file:

• faif/dna/FoldedMatrix.h