faif
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#include <FoldedMatrix.h>
Public Member Functions | |
FoldedMatrixStrategy (const EnergyNucleo &energy) | |
virtual Chain::const_iterator | getNucleotide (int index) const =0 |
virtual int | getSplitIndex () const =0 |
virtual int | getLength () const =0 |
int | getEnergy (int index_A, int index_B) const |
strategy to use folded matrix algorithm with single chain and with two chains
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pure virtual |
return the iterator for nuleotide of i-th index in matrix
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pure virtual |
returns the split index (the first index belonging to the second chain)
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pure virtual |
returns the number of nucleotides in chain (chains)
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inline |
calculates energy between two nucleotides of given indexes
Referenced by faif::dna::FoldedMatrix::getStructures().