Collaboration diagram for faif::dna::FoldedMatrixStrategy:

Public Member Functions
	FoldedMatrixStrategy (const EnergyNucleo &energy)

virtual Chain::const_iterator	getNucleotide (int index) const =0

virtual int	getSplitIndex () const =0

virtual int	getLength () const =0

int	getEnergy (int index_A, int index_B) const

Detailed Description

strategy to use folded matrix algorithm with single chain and with two chains

Member Function Documentation

virtual Chain::const_iterator faif::dna::FoldedMatrixStrategy::getNucleotide ( int index ) const

pure virtual

return the iterator for nuleotide of i-th index in matrix

virtual int faif::dna::FoldedMatrixStrategy::getSplitIndex ( ) const

pure virtual

returns the split index (the first index belonging to the second chain)

virtual int faif::dna::FoldedMatrixStrategy::getLength ( ) const

pure virtual

returns the number of nucleotides in chain (chains)

int faif::dna::FoldedMatrixStrategy::getEnergy	(	int	index_A,
		int	index_B
	)		const

inline

calculates energy between two nucleotides of given indexes

The documentation for this class was generated from the following file: